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OsJRFA107650 Oryza sativa full length cDNA
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MapViewer
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| DESCRIPTION |
OsJRFA107650 Oryza sativa full length cDNA. 2766 bp.
mapped to Chromosome5
from 627288 bp to 639917 bp.
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| VERSION |
OsJRFA107650.1 |
| SOURCE |
Oryza sativa |
| ORGANISM |
Oryza sativa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
Ehrhartoideae; Oryzeae; Oryza.
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| FEATURES |
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| MAPPED TO |
Chromosome5
with 9 aligned blocks.
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Block
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(< Scaffold_start...Scafold_end >
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,< cDNA_start...cDNA_end >
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,< direction >)
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size
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score
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1
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(<628908...627288>,
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<1146...2766>,
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<->)
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1621
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1
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2
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(<637906...637791>,
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<1030...1145>,
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<->)
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116
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1
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3
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(<638293...638032>,
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<768...1029>,
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<->)
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262
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1
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4
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(<638696...638589>,
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<660...767>,
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<->)
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108
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1
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5
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(<638950...638810>,
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<519...659>,
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<->)
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141
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1
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6
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(<639169...639048>,
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<397...518>,
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<->)
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122
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1
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7
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(<639331...639260>,
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<325...396>,
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<->)
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72
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1
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8
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(<639555...639496>,
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<265...324>,
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<->)
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60
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1
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9
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(<639917...639654>,
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<1...264>,
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<->)
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264
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1
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\EST proof num=13
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\Protein proof num=1
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SAGE
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0
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WH/NH
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WH
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GO
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GO:0006355:transcription regulation
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KEGG
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map04210:Apoptosis
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| SNP |
(9311/Japonica) with 4 SNP
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| |
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\snp_position=186
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\snp_position=198
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\snp_position=564
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\snp_position=1047
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CDS
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< 82...1434 >
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PROTEIN
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| 1 |
MGHGVSCART GDEHDFFRAA QLGDLDALAA LLAADPSLAR RATLYDRLSV | | 51 |
LHIAAANGRI EVLSMFLDRG APPDAVNRHK QTPLMLAAMH GKIDCVLKLL | | 101 |
QADANILMFD SVHARTCLHH AAYYGHVDCL QAILAAAQTT PVADSWGFAR | | 151 |
FVNVRDDHGA TPLHLAARQG RPGCVQVLLE NGAIVSALTG SYGFPGSTSL | | 201 |
HLAARSGNLD CIRKLLAWGA DRLQRDSAGR IPYSVALKRN HGACAALLNP | | 251 |
TSAEPMVWPS PLKFISELEP EAKALLEAAL MEANREREKK ILNGTKYSLP | | 301 |
SPSPGDDSAD DDACSEVSDT ELCCICFDQA CTIEVQDCGH QMCAPCTLAL | | 351 |
CCHNKPNPTT LTPPSPACPF CRGSISRLVV AQTRSACDPD KPSSLQLTRK | | 401 |
RSRRSHNLSE GSSSFKGLPS AMGSFSKLGR GSSRMADSDS SNLDKPEHDL
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BASECOUNT A:608 C:763 G:739 T:656
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| 1 |
ATTCTCACTC TCGGCCTTCC TTCCACGGCA GCGCCACCCA CTGCGCCTTC |
| 51 |
GCCGGCGGCG GAGGAGGAGG GAGGTGCGGC CATGGGTCAC GGTGTCAGCT |
| 101 |
GCGCCCGCAC CGGCGACGAG CACGACTTCT TCCGGGCGGC GCAGCTCGGC |
| 151 |
GACCTCGACG CCCTGGCCGC CCTCCTCGCC GCCGACCCTT CCCTCGCTCG |
| 201 |
CCGCGCCACC CTCTACGACC GCCTCTCCGT CCTCCACATC GCCGCCGCCA |
| 251 |
ATGGCCGCAT CGAGGTGCTC TCCATGTTCT TGGATCGCGG GGCGCCGCCG |
| 301 |
GACGCGGTGA ATCGGCACAA GCAGACGCCG CTGATGCTCG CGGCCATGCA |
| 351 |
CGGCAAGATC GACTGCGTGC TCAAGCTCCT CCAGGCCGAC GCAAATATCT |
| 401 |
TGATGTTCGA CTCGGTGCAC GCGAGGACCT GCCTCCACCA CGCGGCGTAC |
| 451 |
TACGGCCACG TCGACTGCCT GCAGGCCATC CTCGCCGCCG CGCAGACCAC |
| 501 |
GCCGGTGGCC GACTCATGGG GTTTCGCCCG GTTCGTCAAC GTCAGGGACG |
| 551 |
ACCACGGCGC CACTCCGCTG CATCTCGCGG CCAGGCAGGG GCGGCCGGGG |
| 601 |
TGCGTGCAGG TGTTGCTGGA GAACGGCGCC ATTGTGTCGG CTTTGACAGG |
| 651 |
ATCATATGGC TTCCCTGGAA GCACGTCGCT TCATTTGGCT GCTCGTAGCG |
| 701 |
GGAACTTGGA TTGCATCAGG AAGCTGCTTG CCTGGGGAGC TGATCGGCTC |
| 751 |
CAAAGGGATT CGGCTGGGAG AATTCCCTAT TCTGTTGCGC TGAAACGGAA |
| 801 |
CCATGGAGCA TGTGCAGCTT TGCTGAACCC TACATCAGCA GAGCCCATGG |
| 851 |
TGTGGCCATC CCCACTTAAG TTCATCAGTG AGCTTGAACC AGAAGCTAAG |
| 901 |
GCTCTCCTGG AAGCAGCTCT GATGGAAGCC AACAGGGAGA GGGAGAAGAA |
| 951 |
AATCCTGAAT GGCACAAAGT ACTCCCTGCC ATCCCCTTCG CCCGGTGATG |
| 1001 |
ACAGTGCCGA TGACGATGCA TGCTCAGAGG TGAGCGACAC GGAGCTTTGC |
| 1051 |
TGCATCTGCT TCGACCAGGC TTGCACCATT GAGGTGCAAG ACTGTGGACA |
| 1101 |
TCAAATGTGT GCACCGTGCA CGCTGGCACT GTGCTGTCAC AACAAACCCA |
| 1151 |
ATCCGACGAC CCTGACACCG CCCTCACCGG CCTGCCCATT CTGCCGGGGC |
| 1201 |
AGCATCTCAC GGCTGGTGGT GGCCCAAACA AGGTCTGCTT GTGATCCTGA |
| 1251 |
CAAGCCGTCA TCCCTGCAGC TCACCCGGAA GCGGTCGCGT CGATCTCACA |
| 1301 |
ACCTCAGTGA GGGCAGCAGC AGCTTCAAAG GGCTACCTTC GGCCATGGGC |
| 1351 |
TCCTTCTCAA AGCTTGGCCG TGGCTCGAGC CGCATGGCGG ACAGTGACAG |
| 1401 |
CAGCAACCTG GACAAGCCTG AGCACGATCT ATGAAAGCAG AACAACGCAC |
| 1451 |
GGACAATCGC CGCATCATCC TCAAAACATC CGTTGGTATC AGAAACCCAG |
| 1501 |
ATGAAAATCC AATGGCTAAT TTGGAGCAAC TTTGATCCAT GGAAAGTTAA |
| 1551 |
ATAGATAGGG ACTAAATAAG TAGAACCCTC CACTCCCCAT TGTCTGTGTG |
| 1601 |
CCCACCCTAT TTTTCGGCTT GCCGGGTTAA GCTTAGCATA TGCATAGGAG |
| 1651 |
CTCTGAAAGA CCAGAGAGAG AGTGAGTGAG TGAGTGAGAG CAATTCATCA |
| 1701 |
TCAATCACAC AGTGAGTGTT GGTGTGGTTA AGGGATGCAT GCAGCAGAGA |
| 1751 |
TGTGAAACGG GGTTCATGTT CGTCACCTCT AAAGTTAGCC TGCCATGGCA |
| 1801 |
TGTGAGCTCT GCGCCGGCCT GACCCCTCCT CCTCTGTGTG ATGAATCATG |
| 1851 |
CCCCCATTTT TGGCCCTTGT CTCGTGTTAT AATGGTGCGA GTTCATGTCC |
| 1901 |
TGGTGATGCT GCAGCCATCA GCAGGGTGGT CCATTGGATC GCCATGAATT |
| 1951 |
CAGCAGCTGC GGTCTCTGCC TATGTGATGA CATTGTATGT ACCGTACTCC |
| 2001 |
AGTGTGTACC GGTTCTTTGA ACTGTGGTGG CGTGTCACTG TCTCTGTCAG |
| 2051 |
TGCCACTGTC CATCGTCGTC CGGCTGTTAC AGCCGGATTG TTACTGCTAG |
| 2101 |
TAATTGGCTT CCTTCGTTCG TTCGTGATGG CATCAGCATC AGATTGTTTC |
| 2151 |
TTTTCTTCAG GCTGATAAAA TGAAGACTGT TGTTGCCTGT AGCTGTATGG |
| 2201 |
TTGTCCTTGC GATCTGTACC TTCTCTTGTG CTCCTACCTG CAGTGATATT |
| 2251 |
GTGAGATCCA GGAGTAGCAT AATTTTTCTA TCGACAAATC ATACCACTAC |
| 2301 |
ATTTCACTTG GAAAGATGGA CTTAGCATCA TAGGTTTAGG TGAGACTGAG |
| 2351 |
GACCAACTCT GATTAACACT GAAGTCTGCC GTGTGGATTG GGTTTAGATT |
| 2401 |
GAAAGAAATT CATGGAGATA ACAAGAATTT TTGTGGCAAA AGCTTTGTTG |
| 2451 |
TTATGCAGAG TTTAAGGACT AGGAGATGAC TATATGAGAC ACAAGCCAAG |
| 2501 |
TGCTACTGTA GTTTGTTTTG ACCAGGACAC AGCACACAAC TTGGAATTTG |
| 2551 |
GAAACCTTCC AAGTCATGGC TGCAATTCCA CGTCAGGCTT GGTGATCGAC |
| 2601 |
CTAGTAGTTC TTTTGCTTCT TGTGACGAAC TGACGATAAC ACGGACAGAT |
| 2651 |
ATTTGTGAAG CTTTGGCCAT TCTATAGTCC ATATGATCAC TCAAGCAAAA |
| 2701 |
AATATCTTGG TGCCACACCT CATCATGTGA CAGAAACTAA CTAATAATTT |
| 2751 |
CAAAGTGCGA TTAATT
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