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OsJRFA059322 Oryza sativa full length cDNA
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MapViewer
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| DESCRIPTION |
OsJRFA059322 Oryza sativa full length cDNA. 1474 bp.
mapped to Chromosome5
from 628189 bp to 639175 bp.
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| VERSION |
OsJRFA059322.1 |
| SOURCE |
Oryza sativa |
| ORGANISM |
Oryza sativa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
Ehrhartoideae; Oryzeae; Oryza.
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| FEATURES |
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| MAPPED TO |
Chromosome5
with 6 aligned blocks.
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Block
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(< Scaffold_start...Scafold_end >
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,< cDNA_start...cDNA_end >
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,< direction >)
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size
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score
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1
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(<628908...628189>,
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<755...1474>,
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<->)
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720
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1
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2
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(<637906...637791>,
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<639...754>,
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<->)
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116
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1
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3
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(<638293...638032>,
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<377...638>,
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<->)
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262
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1
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4
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(<638696...638589>,
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<269...376>,
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<->)
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108
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1
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5
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(<638950...638810>,
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<128...268>,
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<->)
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141
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1
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6
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(<639175...639048>,
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<1...127>,
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<->)
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127
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1
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\EST proof num=8
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\Protein proof num=0
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SAGE
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0
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WH/NH
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WH
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GO
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None
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KEGG
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None
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| SNP |
(9311/Japonica) with 0 SNP
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CDS
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< 12...1043 >
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PROTEIN
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| 1 |
MFDSVHARTC LHHAAYYGHV DCLQAILAAA QTTPVADSWG FARFVNVRDD | | 51 |
HGATPLHLAA RQGRPGCVQV LLENGAIVSA LTGSYGFPGS TSLHLAARSG | | 101 |
NLDCIRKLLA WGADRLQRDS AGRIPYSVAL KRNHGACAAL LNPTSAEPMV | | 151 |
WPSPLKFISE LEPEAKALLE AALMEANRER EKKILNGTKY SLPSPSPGDD | | 201 |
SADDDACSEV SDTELCCICF DQACTIEVQD CGHQMCAPCT LALCCHNKPN | | 251 |
PTTLTPPSPA CPFCRGSISR LVVAQTRSAC DPDKPSSLQL TRKRSRRSHN | | 301 |
LSEGSSSFKG LPSAMGSFSK LGRGSSRMAD SDSSNLDKPE HDL
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BASECOUNT A:333 C:420 G:412 T:309
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| 1 |
CAAATATCTT GATGTTCGAC TCGGTGCACG CGAGGACCTG CCTCCACCAC |
| 51 |
GCGGCGTACT ACGGCCACGT CGACTGCCTG CAGGCCATCC TCGCCGCCGC |
| 101 |
GCAGACCACG CCGGTGGCCG ACTCATGGGG TTTCGCCCGG TTCGTCAACG |
| 151 |
TCAGGGACGA CCACGGCGCC ACTCCGCTGC ATCTCGCGGC CAGGCAGGGG |
| 201 |
CGGCCGGGGT GCGTGCAGGT GTTGCTGGAG AACGGCGCCA TTGTGTCGGC |
| 251 |
TTTGACAGGA TCATATGGCT TCCCTGGAAG CACGTCGCTT CATTTGGCTG |
| 301 |
CTCGTAGCGG GAACTTGGAT TGCATCAGGA AGCTGCTTGC CTGGGGAGCT |
| 351 |
GATCGGCTCC AAAGGGATTC GGCTGGGAGA ATTCCCTATT CTGTTGCGCT |
| 401 |
GAAACGGAAC CATGGAGCAT GTGCAGCTTT GCTGAACCCT ACATCAGCAG |
| 451 |
AGCCCATGGT GTGGCCATCC CCACTTAAGT TCATCAGTGA GCTTGAACCA |
| 501 |
GAAGCTAAGG CTCTCCTGGA AGCAGCTCTG ATGGAAGCCA ACAGGGAGAG |
| 551 |
GGAGAAGAAA ATCCTGAATG GCACAAAGTA CTCCCTGCCA TCCCCTTCGC |
| 601 |
CCGGTGATGA CAGTGCCGAT GACGATGCAT GCTCAGAGGT GAGCGACACG |
| 651 |
GAGCTTTGCT GCATCTGCTT CGACCAGGCT TGCACCATTG AGGTGCAAGA |
| 701 |
CTGTGGACAT CAAATGTGTG CACCGTGCAC GCTGGCACTG TGCTGTCACA |
| 751 |
ACAAACCCAA TCCGACGACC CTGACACCGC CCTCACCGGC CTGCCCATTC |
| 801 |
TGCCGGGGCA GCATCTCACG GCTGGTGGTG GCCCAAACAA GGTCTGCTTG |
| 851 |
TGATCCTGAC AAGCCGTCAT CCCTGCAGCT CACCCGGAAG CGGTCGCGTC |
| 901 |
GATCTCACAA CCTCAGTGAG GGCAGCAGCA GCTTCAAAGG GCTACCTTCG |
| 951 |
GCCATGGGCT CCTTCTCAAA GCTTGGCCGT GGCTCGAGCC GCATGGCGGA |
| 1001 |
CAGTGACAGC AGCAACCTGG ACAAGCCTGA GCACGATCTA TGAAAGCAGA |
| 1051 |
ACAACGCACG GACAATCGCC GCATCATCCT CAAGACATCC GTTGGTATCA |
| 1101 |
GAAACCCAGA TGAAAATCCA ATGGCTAATT TGGAGCAACT TTGATCCATG |
| 1151 |
GAAAGTTAAA TAGATAGGGA CTAAATAAGT AGAACCCTCC ACTCCCCATT |
| 1201 |
GTCTGTGTGC CCACCCTATT TTTCGGCTTG CCGGGTTAAG CTTAGCATAT |
| 1251 |
GCATAGGAGC TCTGAAAGAC CAGAGAGAGA GTGAGTGAGT GAGTGAGAGC |
| 1301 |
AATTCATCAT CAATCACACA GTGAGTGTTG GTGTGGTTAA GGGATGCATG |
| 1351 |
CAGCAGAGAT GTGAAACGGG GTTCATGTTC GTCACCTCTA AAGTTAGCCT |
| 1401 |
GCCATGGCAT GTGAGCTCTG CGCCGGCCTG ACCCCTCCTC CTCTGTGTGA |
| 1451 |
TGAATCATGC CCCCATTTTT GGCC
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