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OsJRFA102800 Oryza sativa full length cDNA
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MapViewer
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| DESCRIPTION |
OsJRFA102800 Oryza sativa full length cDNA. 2017 bp.
mapped to Chromosome5
from 628059 bp to 639939 bp.
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| VERSION |
OsJRFA102800.1 |
| SOURCE |
Oryza sativa |
| ORGANISM |
Oryza sativa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
Ehrhartoideae; Oryzeae; Oryza.
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| FEATURES |
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| MAPPED TO |
Chromosome5
with 9 aligned blocks.
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Block
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(< Scaffold_start...Scafold_end >
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,< cDNA_start...cDNA_end >
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,< direction >)
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size
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score
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1
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(<628908...628059>,
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<1168...2017>,
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<->)
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850
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1
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2
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(<637906...637791>,
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<1052...1167>,
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<->)
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116
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1
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3
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(<638293...638032>,
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<790...1051>,
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<->)
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262
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1
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4
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(<638696...638589>,
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<682...789>,
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<->)
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108
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1
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5
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(<638950...638810>,
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<541...681>,
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<->)
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141
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1
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6
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(<639169...639048>,
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<419...540>,
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<->)
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122
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1
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7
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(<639331...639260>,
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<347...418>,
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<->)
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72
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1
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8
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(<639555...639496>,
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<287...346>,
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<->)
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60
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1
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9
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(<639939...639654>,
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<1...286>,
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<->)
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286
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1
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\EST proof num=12
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\Protein proof num=0
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SAGE
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7
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WH/NH
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WH
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GO
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None
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KEGG
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None
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| SNP |
(9311/Japonica) with 0 SNP
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CDS
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< 104...1456 >
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PROTEIN
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| 1 |
MGHGVSCART GDEHDFFRAA QLGDLDALAA LLAADPSLAR RATLYDRLSV | | 51 |
LHIAAANGRI EVLSMFLDRG APPDAVNRHK QTPLMLAAMH GKIDCVLKLL | | 101 |
QADANILMFD SVHARTCLHH AAYYGHVDCL QAILAAAQTT PVADSWGFAR | | 151 |
FVNVRDDHGA TPLHLAARQG RPGCVQVLLE NGAIVSALTG SYGFPGSTSL | | 201 |
HLAARSGNLD CIRKLLAWGA DRLQRDSAGR IPYSVALKRN HGACAALLNP | | 251 |
TSAEPMVWPS PLKFISELEP EAKALLEAAL MEANREREKK ILNGTKYSLP | | 301 |
SPSPGDDSAD DDACSEVSDT ELCCICFDQA CTIEVQDCGH QMCAPCTLAL | | 351 |
CCHNKPNPTT LTPPSPACPF CRGSISRLVV AQTRSACDPD KQSSLQLTRK | | 401 |
RSRRSHNLSE GSSSFKGLPS AMGSFSKLGR GSSRMADSDS SNLDKPEHDL
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BASECOUNT A:409 C:617 G:570 T:421
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| 1 |
GTTTGGGCTC CTTCCTTTCC CCATTCTCAC TCTCGGCCTT CCTTCCACGG |
| 51 |
CAGCGCCTCC CACTGCGCCT TCGCCGGCGG CGGAGGAGGA GGGAGGTGCG |
| 101 |
GCCATGGGTC ACGGTGTCAG CTGCGCCCGC ACCGGCGACG AGCACGACTT |
| 151 |
CTTCCGGGCG GCGCAGCTCG GCGACCTCGA CGCCCTGGCC GCCCTCCTCG |
| 201 |
CCGCCGACCC TTCCCTCGCT CGCCGCGCCA CCCTCTACGA CCGCCTCTCC |
| 251 |
GTCCTCCACA TCGCCGCCGC CAATGGCCGC ATCGAGGTGC TCTCCATGTT |
| 301 |
CTTGGATCGC GGGGCGCCGC CGGACGCGGT GAATCGGCAC AAGCAGACGC |
| 351 |
CGCTGATGCT CGCGGCCATG CACGGCAAGA TCGACTGCGT GCTCAAGCTC |
| 401 |
CTCCAGGCCG ACGCAAATAT CTTGATGTTC GACTCGGTGC ACGCGAGGAC |
| 451 |
CTGCCTCCAC CACGCGGCGT ACTACGGCCA CGTCGACTGC CTGCAGGCCA |
| 501 |
TCCTCGCCGC CGCGCAGACC ACGCCGGTGG CCGACTCATG GGGTTTCGCC |
| 551 |
CGGTTCGTCA ACGTCAGGGA CGACCACGGC GCCACTCCGC TGCATCTCGC |
| 601 |
GGCCAGGCAG GGGCGGCCGG GGTGCGTGCA GGTGTTGCTG GAGAACGGCG |
| 651 |
CCATTGTGTC GGCTTTGACA GGATCATATG GCTTCCCTGG AAGCACGTCG |
| 701 |
CTTCATTTGG CTGCTCGTAG CGGGAACTTG GATTGCATCA GGAAGCTGCT |
| 751 |
TGCCTGGGGA GCTGATCGGC TCCAAAGGGA TTCGGCTGGG AGAATTCCCT |
| 801 |
ATTCTGTTGC GCTGAAACGG AACCATGGAG CATGTGCAGC TTTGCTGAAC |
| 851 |
CCTACATCAG CAGAGCCCAT GGTGTGGCCA TCCCCACTTA AGTTCATCAG |
| 901 |
TGAGCTTGAA CCAGAAGCTA AGGCTCTCCT GGAAGCAGCT CTGATGGAAG |
| 951 |
CCAACAGGGA GAGGGAGAAG AAAATCCTGA ATGGCACAAA GTACTCCCTG |
| 1001 |
CCATCCCCTT CGCCCGGTGA TGACAGTGCC GATGACGATG CATGCTCAGA |
| 1051 |
GGTGAGCGAC ACGGAGCTTT GCTGCATCTG CTTCGACCAG GCTTGCACCA |
| 1101 |
TTGAGGTGCA AGACTGTGGA CATCAAATGT GTGCACCGTG CACGCTGGCA |
| 1151 |
CTGTGCTGTC ACAACAAACC CAATCCGACG ACCCTGACAC CGCCCTCACC |
| 1201 |
GGCCTGCCCA TTCTGCCGGG GCAGCATCTC ACGGCTGGTG GTGGCCCAAA |
| 1251 |
CAAGGTCTGC TTGTGATCCT GACAAGCAGT CATCCCTGCA GCTCACCCGG |
| 1301 |
AAGCGGTCGC GTCGATCTCA CAACCTCAGT GAGGGCAGCA GCAGCTTCAA |
| 1351 |
AGGGCTACCT TCGGCCATGG GCTCCTTCTC AAAGCTTGGC CGTGGCTCGA |
| 1401 |
GCCGCATGGC GGACAGTGAC AGCAGCAACC TGGACAAGCC TGAGCACGAT |
| 1451 |
CTATGAAAGC AGAACAACGC ACGGACAATC GCCGCATCAT CCTCAAAACA |
| 1501 |
TCCGTTGGTA TCAGAAACCC AGATGAAAAT CCAATGGCTA ATTTGGAGCA |
| 1551 |
ACTTTGATCC ATGGAAAGTT AAATAGATAG GGACTAAATA AGTAGAACCC |
| 1601 |
TCCACTCCCC ATTGTCTGTG TGCCCACCCT ATTTTTCGGC TTGCCGGGTT |
| 1651 |
AAGCTTAGCA TATGCATAGG AGCTCTGAAA GACCAGAGAG AGAGTGAGTG |
| 1701 |
AGTGAGTGAG AGCAATTCAT CATCAATCAC ACAGTGAGTG TTGGTGTGGT |
| 1751 |
TAAGGGATGC ATGCAGCAGA GATGTGAAAC GGGGTTCATG TTCGTCACCT |
| 1801 |
CTAAAGTTAG CCTGCCATGG CATGTGAGCT CTGCGCCGGC CTGACCCCTC |
| 1851 |
CTCCTCTGTG TGATGAATCA TGCCCCCATT TTTGGCCCTT GTCTCGTGTT |
| 1901 |
ATAATGGTGC GAGTTCATGT CCTGGTGATG CTGCAGCCAT CAGCAGGGTG |
| 1951 |
GTCCATTGGA TCGCCATGAA TTCAGCAGCT GCGGTCTCTG CCTATGTGAT |
| 2001 |
GACATTGTAT GTACCGT
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