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OsJRFA105623 Oryza sativa full length cDNA
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MapViewer
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| DESCRIPTION |
OsJRFA105623 Oryza sativa full length cDNA. 2187 bp.
mapped to Chromosome5
from 627864 bp to 639914 bp.
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| VERSION |
OsJRFA105623.1 |
| SOURCE |
Oryza sativa |
| ORGANISM |
Oryza sativa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
Ehrhartoideae; Oryzeae; Oryza.
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| FEATURES |
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| MAPPED TO |
Chromosome5
with 9 aligned blocks.
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Block
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(< Scaffold_start...Scafold_end >
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,< cDNA_start...cDNA_end >
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,< direction >)
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size
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score
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1
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(<628908...627864>,
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<1143...2187>,
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<->)
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1045
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1
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2
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(<637906...637791>,
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<1027...1142>,
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<->)
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116
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1
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3
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(<638293...638032>,
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<765...1026>,
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<->)
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262
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1
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4
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(<638696...638589>,
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<657...764>,
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<->)
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108
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1
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5
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(<638950...638810>,
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<516...656>,
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<->)
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141
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1
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6
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(<639169...639048>,
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<394...515>,
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<->)
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122
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1
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7
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(<639331...639260>,
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<322...393>,
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<->)
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72
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1
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8
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(<639555...639496>,
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<262...321>,
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<->)
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60
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1
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9
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(<639914...639654>,
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<1...261>,
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<->)
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261
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1
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\EST proof num=13
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\Protein proof num=0
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SAGE
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7
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WH/NH
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WH
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GO
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None
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KEGG
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None
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| SNP |
(9311/Japonica) with 0 SNP
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CDS
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< 79...1431 >
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PROTEIN
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| 1 |
MGHGVSCART GDEHDFFRAA QLGDLDALAA LLAADPSLAR RATLYDRLPV | | 51 |
LHIAAANGRI EVLSMFLDRG APPDAVNRHK QTPLMLAAMH GKIDCVLKLL | | 101 |
QADANILMFD SVHARTCLHH AAYYGHVDCL QAILAAAQTT PVADSWGFAR | | 151 |
FVNVRDDHGA TPLHLAARQG RPGCVQVLLE NGAIVSALTG SYGFPGSTSL | | 201 |
HLAARSGNLD CIRKLLAWGA DRLQRDSAGR IPYSVALKRN HGACAALLNP | | 251 |
TSAEPMVWPS PLKFISELEP AAKALLEAAL MEANREREKK ILNGTKYSLP | | 301 |
SPSPGDDSAD DDACSEVSDT ELCCICFDQA CTIEVQDCGH QMCAPCTLAL | | 351 |
CCHNKPNPTT LTPPSPACPF CRGSISRLVV AQTRSACDPD KPSSLQLTRK | | 401 |
RSRRSHNLSE GSSSFKGLPS AMGSFSKLGR GSSRMADSDS SNLDKPEHDL
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BASECOUNT A:438 C:657 G:615 T:477
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| 1 |
CTCACTCTCG GCCTTCCTTC CACGGCAGCG CCACCCACTG CGCCTTCGCC |
| 51 |
GGCGGCGGAG GAGGAGGGAG GTGCGGCCAT GGGTCACGGT GTCAGCTGCG |
| 101 |
CCCGCACCGG CGACGAGCAC GACTTCTTCC GGGCGGCGCA GCTCGGCGAC |
| 151 |
CTCGACGCCC TGGCCGCCCT CCTCGCCGCC GACCCTTCCC TCGCTCGCCG |
| 201 |
CGCCACCCTC TACGACCGCC TCCCCGTCCT CCACATCGCC GCCGCCAATG |
| 251 |
GCCGCATCGA GGTGCTCTCC ATGTTCTTGG ATCGCGGGGC GCCGCCGGAC |
| 301 |
GCGGTGAATC GGCACAAGCA GACGCCGCTG ATGCTCGCGG CCATGCACGG |
| 351 |
CAAGATCGAC TGCGTGCTCA AGCTCCTCCA GGCCGACGCA AATATCTTGA |
| 401 |
TGTTCGACTC GGTGCACGCG AGGACCTGCC TCCACCACGC GGCGTACTAC |
| 451 |
GGCCACGTCG ACTGCCTGCA GGCCATCCTC GCCGCCGCGC AGACCACGCC |
| 501 |
GGTGGCCGAC TCATGGGGTT TCGCCCGGTT CGTCAACGTC AGGGACGACC |
| 551 |
ACGGCGCTAC TCCGCTGCAT CTCGCGGCCA GGCAGGGGCG GCCGGGGTGC |
| 601 |
GTGCAGGTGT TGCTGGAGAA CGGCGCCATT GTGTCGGCTT TGACAGGATC |
| 651 |
ATATGGCTTC CCTGGAAGCA CGTCGCTTCA TTTGGCTGCT CGTAGCGGGA |
| 701 |
ACTTGGATTG CATCAGGAAG CTGCTTGCCT GGGGAGCTGA TCGGCTCCAA |
| 751 |
AGGGATTCGG CTGGGAGAAT TCCCTATTCT GTCGCGCTGA AACGGAACCA |
| 801 |
TGGAGCATGT GCAGCTTTGC TGAACCCTAC ATCAGCAGAG CCCATGGTGT |
| 851 |
GGCCATCCCC ACTTAAGTTC ATCAGTGAGC TTGAACCAGC AGCTAAGGCT |
| 901 |
CTCCTGGAAG CAGCTCTGAT GGAAGCCAAC AGGGAGAGGG AGAAGAAAAT |
| 951 |
CCTGAATGGC ACAAAGTACT CCCTGCCATC CCCTTCGCCC GGTGATGACA |
| 1001 |
GTGCCGATGA CGATGCATGC TCAGAGGTGA GCGACACGGA GCTTTGCTGC |
| 1051 |
ATCTGCTTCG ACCAGGCTTG CACCATTGAG GTGCAAGACT GTGGACATCA |
| 1101 |
AATGTGTGCA CCGTGCACGC TGGCACTGTG CTGTCACAAC AAACCCAATC |
| 1151 |
CGACGACCCT GACACCGCCC TCACCGGCCT GCCCATTCTG CCGGGGCAGC |
| 1201 |
ATCTCACGGC TGGTGGTGGC CCAAACAAGG TCTGCCTGTG ATCCTGACAA |
| 1251 |
GCCGTCATCC CTGCAGCTCA CCCGGAAGCG GTCGCGTCGA TCTCACAACC |
| 1301 |
TCAGTGAGGG CAGCAGCAGC TTCAAAGGGC TACCTTCGGC CATGGGCTCC |
| 1351 |
TTCTCAAAGC TTGGCCGTGG CTCGAGCCGC ATGGCGGACA GTGACAGCAG |
| 1401 |
CAACCTGGAC AAGCCTGAGC ACGATCTATG AAAGCAGAAC AACGCACGGA |
| 1451 |
CAATCGCCGC ATCATCCTCA AAACATCCGT TGGTATCAGA AACCCAGATG |
| 1501 |
AAAATCCAAT GGCTAATTTG GAGCAACTTT GATCCATGGA AAGTTAAATA |
| 1551 |
GATAGGGACT AAATAAGTAG AACCCTCCAC TCCCCATTGT CTGTGTGCCC |
| 1601 |
ACCCTATTTT TCGGCTTGCC GGGTTAAGCT TAGCATATGC ATAGGAGCTC |
| 1651 |
TGAAAGACCA GAGAGAGAGT GAGTGAGTGA GTGAGAGCAA TTCATCATCA |
| 1701 |
ATCACACAGT GAGTGTTGGT GTGGTTAAGG GATGCATGCA GCAGAGATGT |
| 1751 |
GAAACGGGGT TCATGTTCGT CACCTCTAAA GTTAGCCTGC CATGGCATGT |
| 1801 |
GAGCTCTGCG CCGGCCTGAC CCCTCCTCCT CTGTGTGATG AATCATGCCC |
| 1851 |
CCATTTTTGG CCCTTGTCTC GTGTTATAAT GGTGCGAGTT CATGTCCTGG |
| 1901 |
TGATGCTGCA GCCATCAGCA GGGTGGTCCA TTGGATCGCC ATGAATTCAG |
| 1951 |
CAGCTGCGGT CTCTGCCTAT GTGATGACAT TGTATGTACC GTACTCCAGT |
| 2001 |
GTGTACCGGT TCTTTGAACT GTGGTGGCGT GTCACTGTCT CTGTCAGTGC |
| 2051 |
CACTGTCCAT CGTCGTCCGG CTGTTACAGC CGGATTGTTA CTGCTAGTAA |
| 2101 |
TTGGCTTCCT TCGTTCGTTC GTGATGGCAT CAGCATCAGA TTGTTTCTTT |
| 2151 |
TCTTCAGGCT GATAAAATGA AGACTGTTGT TGCCTGT
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