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OsJRFA105930 Oryza sativa full length cDNA
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MapViewer
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| DESCRIPTION |
OsJRFA105930 Oryza sativa full length cDNA. 1781 bp.
mapped to Chromosome5
from 628190 bp to 639834 bp.
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| VERSION |
OsJRFA105930.1 |
| SOURCE |
Oryza sativa |
| ORGANISM |
Oryza sativa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
Ehrhartoideae; Oryzeae; Oryza.
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| FEATURES |
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| MAPPED TO |
Chromosome5
with 9 aligned blocks.
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Block
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(< Scaffold_start...Scafold_end >
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,< cDNA_start...cDNA_end >
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,< direction >)
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size
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score
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1
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(<628908...628190>,
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<1063...1781>,
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<->)
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719
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1
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2
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(<637906...637791>,
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<947...1062>,
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<->)
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116
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1
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3
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(<638293...638032>,
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<685...946>,
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<->)
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262
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1
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4
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(<638696...638589>,
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<577...684>,
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<->)
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108
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1
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5
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(<638950...638810>,
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<436...576>,
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<->)
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141
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1
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6
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(<639169...639048>,
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<314...435>,
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<->)
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122
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1
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7
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(<639331...639260>,
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<242...313>,
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<->)
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72
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1
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8
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(<639555...639496>,
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<182...241>,
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<->)
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60
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1
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9
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(<639834...639654>,
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<1...181>,
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<->)
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181
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1
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\EST proof num=12
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\Protein proof num=0
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SAGE
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0
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WH/NH
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WH
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GO
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None
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KEGG
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None
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| SNP |
(9311/Japonica) with 0 SNP
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CDS
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< 191...1351 >
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PROTEIN
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| 1 |
MFLDRGAPPD AVNRHKQTPL MLAAMHGKID CVLKLLQADA NILMFDSVHA | | 51 |
RTCLHHAAYY GHVDCLQAIL AAAQTTPVAD SWGFARFVNV RDDHGATPLH | | 101 |
LAARQGRPGC VQVLLENGAI VSALTGSYGF PGSTSLHLAA RSGNLDCIRK | | 151 |
LLAWGADRLQ RDSAGRIPYS VALKRNHGAC AALLNPTSAE PMVWPSPLKF | | 201 |
ISELEPEAKA LLEAALMEAN REREKKILNG TKYSLPSPSP GDDSADDDAC | | 251 |
SEVSDTELCC ICFDQACTIE VQDCGHQMCA PCTLALCCHN KPNPTTLTPP | | 301 |
SPACPFCRGS ISRLVVAQTR SACDPDKPSS LQLTRKRSRR SHNLSEGSSS | | 351 |
FKGLPSAMGS FSKLGRGSSR MADSDSSNLD KPEHDL
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BASECOUNT A:375 C:548 G:502 T:356
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| 1 |
GGGTCACGGT GTCAGCTGCG CCCGCACCGG CGACGAGCAC GACTTCTTCC |
| 51 |
GGGCGGCGCA GCTCGGCGAC CTCGACGCCC TGGCCGCCCT CCTCGCCGCC |
| 101 |
GACCCTTCCC TCGCTCGCCG CGCCACCCTC TACGACCGCC TCTCCGTCCT |
| 151 |
CCACATCGCC GCCGCCAATG GCCGCATCGA GGTGCTCTCC ATGTTCTTGG |
| 201 |
ATCGCGGGGC GCCGCCGGAC GCGGTGAATC GGCACAAGCA GACGCCGCTG |
| 251 |
ATGCTCGCGG CCATGCACGG CAAGATCGAC TGCGTGCTCA AGCTCCTCCA |
| 301 |
GGCCGACGCA AATATCTTGA TGTTCGACTC GGTGCACGCG AGGACCTGCC |
| 351 |
TCCACCACGC GGCGTACTAC GGCCACGTCG ACTGCCTGCA GGCCATCCTC |
| 401 |
GCCGCCGCGC AGACCACGCC GGTGGCCGAC TCATGGGGTT TCGCCCGGTT |
| 451 |
CGTCAACGTC AGGGACGACC ACGGCGCCAC TCCGCTGCAT CTCGCGGCCA |
| 501 |
GGCAGGGGCG GCCGGGGTGC GTGCAGGTGT TGCTGGAGAA CGGCGCCATT |
| 551 |
GTGTCGGCTT TGACAGGATC ATATGGCTTC CCTGGAAGCA CGTCGCTTCA |
| 601 |
TTTGGCTGCT CGTAGCGGGA ACTTGGATTG CATCAGGAAG CTGCTTGCCT |
| 651 |
GGGGAGCTGA TCGGCTCCAA AGGGATTCGG CTGGGAGAAT TCCCTATTCT |
| 701 |
GTTGCGCTGA AACGGAACCA TGGAGCATGT GCAGCTTTGC TGAACCCTAC |
| 751 |
ATCAGCAGAG CCCATGGTGT GGCCATCCCC ACTTAAGTTC ATCAGTGAGC |
| 801 |
TTGAACCAGA AGCTAAGGCT CTCCTGGAAG CAGCTCTGAT GGAAGCCAAC |
| 851 |
AGGGAGAGGG AGAAGAAAAT CCTGAATGGC ACAAAGTACT CCCTGCCATC |
| 901 |
CCCTTCGCCC GGTGATGACA GTGCCGATGA CGATGCATGC TCAGAGGTGA |
| 951 |
GCGACACGGA GCTTTGCTGC ATCTGCTTCG ACCAGGCTTG CACCATTGAG |
| 1001 |
GTGCAAGACT GTGGACATCA AATGTGTGCA CCGTGCACGC TGGCACTGTG |
| 1051 |
CTGTCACAAC AAACCCAATC CGACGACCCT GACACCGCCC TCACCGGCCT |
| 1101 |
GCCCATTCTG CCGGGGCAGC ATCTCACGGC TGGTGGTGGC CCAAACAAGG |
| 1151 |
TCTGCTTGTG ATCCTGACAA GCCGTCATCC CTGCAGCTCA CCCGGAAGCG |
| 1201 |
GTCGCGTCGA TCTCACAACC TCAGTGAGGG CAGCAGCAGC TTCAAAGGGC |
| 1251 |
TACCTTCGGC CATGGGCTCC TTCTCAAAGC TTGGCCGTGG CTCGAGCCGC |
| 1301 |
ATGGCGGACA GTGACAGCAG CAACCTGGAC AAGCCTGAGC ACGATCTATG |
| 1351 |
AAAGCAGAAC AACGCACGGA CAATCGCCGC ATCATCCTCA AAACATCCGT |
| 1401 |
TGGTATCAGA AACCCAGATG AAAATCCAAT GGCTAATTTG GAGCAACTTT |
| 1451 |
GATCCATGGA AAGTTAAATA GATAGGGACT AAATAAGTAG AACCCTCCAC |
| 1501 |
TCCCCATTGT CTGTGTGCCC ACCCTATTTT TCGGCTTGCC GGGTTAAGCT |
| 1551 |
TAGCATATGC ATAGGAGCTC TGAAAGACCA GAGAGAGAGT GAGTGAGTGA |
| 1601 |
GTGAGAGCAA TTCATCATCA ATCACACAGT GAGTGTTGGT GTGGTTAAGG |
| 1651 |
GATGCATGCA GCAGAGATGT GAAACGGGGT TCATGTTCGT CACCTCTAAA |
| 1701 |
GTTAGCCTGC CATGGCATGT GAGCTCTGCG CCGGCCTGAC CCCTCCTCCT |
| 1751 |
CTGTGTGATG AATCATGCCC CCATTTTTGG C
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