| MapView for each rice genome (i.e. species-specific map) is composed of three types of sub-viewers in hierachical architecture, namely ChroView/OverView, ContigView and GeneView/cDNAView. A factual report for each element contained in this visualization system will be displayed automatically on demand. |
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| ChroView:ChroView is based on a low-resolution physical map with sequence contigs/scaffolds aligned to, and relevant statistics of the aligned sequences and genomic elements such as SNPs, genes, cDNAs and repeats. Conserved synteny between Beijing indica and Syngenta japonica are also marked out. |
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| ContigView:Present the annotated information of the chosen contigs/scaffolds. Anchored BAC ends, predicted genes, classes of repeats, and SNPs etc are positioned along the targeted area with distinct color-coding. |
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| GeneView:Detailed information about each specific gene, such as exon-intron structures and protein sequences. |
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| cDNAView:Detailed information about each specific cDNA. |
