| MapView for each rice genome (i.e. species-specific map) is composed of three types of sub-viewers in hierachical architecture, namely ChroView/OverView, ContigView and GeneView/cDNAView. A factual report for each element contained in this visualization system will be displayed automatically on demand. |
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| ChroView:ChroView is based on a low-resolution physical map with sequence contigs/scaffolds aligned to, and relevant statistics of the aligned sequences and genomic elements such as SNPs, genes, cDNAs and repeats. Conserved synteny between indica (93-11) and japonica are also marked out. |
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| ContigView:Present the annotated information of the chosen contigs/scaffolds. Anchored BAC ends, predicted genes, classes of repeats, and SNPs etc are positioned along the targeted area with distinct color-coding. |
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| GeneView:Detailed information about each specific gene, such as exon-intron structures and protein sequences. |
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| cDNAView:Detailed information about each specific cDNA. |
